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Protein interaction networks: Integr...

Srinivasan, Balaji Subbaraman.

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Protein interaction networks: Integration, analysis, and alignment.

Record Type:	Language materials, printed : Monograph/item
Title/Author:	Protein interaction networks: Integration, analysis, and alignment./
Author:	Srinivasan, Balaji Subbaraman.
Description:	148 p.
Notes:	Adviser: Harley McAdams.
Contained By:	Dissertation Abstracts International67-05B.
Subject:	Biology, Genetics. -
Online resource:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3219389
ISBN:	9780542708237

Protein interaction networks: Integration, analysis, and alignment.
Srinivasan, Balaji Subbaraman.

Protein interaction networks: Integration, analysis, and alignment. - 148 p.

Adviser: Harley McAdams.

Thesis (Ph.D.)--Stanford University, 2006.

I have combined four different kinds of functional genomic data to create high coverage, probabilistic protein interaction networks for 312 microbes. My integration algorithm naturally handles statistically dependent predictors and automatically corrects for differing noise levels and data corruption in different evidence sources. I find that a plurality of the predictions in each integrated network hinge on moderate but consistent evidence from multiple sources rather than strong evidence from a single source, yielding novel biology that would be missed if a single data source such as coexpression or coinheritance were used in isolation.

ISBN: 9780542708237Subjects--Topical Terms:

1017730
Biology, Genetics.

Protein interaction networks: Integration, analysis, and alignment.
LDR:02356nam 2200301 a 45 001 954366
005 20110622
008 110622s2006 eng d
020 $a 9780542708237
035 $a (UMI)AAI3219389
035 $a AAI3219389
040 $a UMI $c UMI
100 1 $a Srinivasan, Balaji Subbaraman. $3 1277837
245 1 0 $a Protein interaction networks: Integration, analysis, and alignment.
300 $a 148 p.
500 $a Adviser: Harley McAdams.
500 $a Source: Dissertation Abstracts International, Volume: 67-05, Section: B, page: 2381.
502 $a Thesis (Ph.D.)--Stanford University, 2006.
520 $a I have combined four different kinds of functional genomic data to create high coverage, probabilistic protein interaction networks for 312 microbes. My integration algorithm naturally handles statistically dependent predictors and automatically corrects for differing noise levels and data corruption in different evidence sources. I find that a plurality of the predictions in each integrated network hinge on moderate but consistent evidence from multiple sources rather than strong evidence from a single source, yielding novel biology that would be missed if a single data source such as coexpression or coinheritance were used in isolation.
520 $a I demonstrate that these hidden interactions uncover new aspects of well studied functional modules in a broad range of microbial species. I accompany this analysis with a strategy for systematic, computer-guided laboratory validation. As this work represents the largest collection of probabilistic protein interaction networks compiled to date, I have worked with collaborators to create tools for network alignment to organize this information. By developing the first scalable multiple network alignment algorithm, we have identified thousands of conserved modules in diverse microbial species. Our integration, validation, and alignment algorithms can be applied to any sequenced organism and any kind of experimental or computational technique which produces pairwise measures of protein interaction.
590 $a School code: 0212.
650 4 $a Biology, Genetics. $3 1017730
650 4 $a Biology, Molecular. $3 1017719
650 4 $a Engineering, Electronics and Electrical. $3 626636
690 $a 0307
690 $a 0369
690 $a 0544
710 2 $a Stanford University. $3 754827
773 0 $t Dissertation Abstracts International $g 67-05B.
790 $a 0212
790 1 0 $a McAdams, Harley, $e advisor
791 $a Ph.D.
792 $a 2006
856 4 0 $u http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3219389