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Developing Analytical Tools to Investigate the Role of Translation in Homeostasis and Disease.

紀錄類型:	書目-電子資源 : Monograph/item
正題名/作者:	Developing Analytical Tools to Investigate the Role of Translation in Homeostasis and Disease./
作者:	Oertlin, Christian.
面頁冊數:	1 online resource (98 pages)
附註:	Source: Dissertations Abstracts International, Volume: 82-11, Section: B.
Contained By:	Dissertations Abstracts International82-11B.
標題:	Oncology. -
電子資源:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=28518571click for full text (PQDT)
ISBN:	9798728224433

Developing Analytical Tools to Investigate the Role of Translation in Homeostasis and Disease.
Oertlin, Christian.

Developing Analytical Tools to Investigate the Role of Translation in Homeostasis and Disease. - 1 online resource (98 pages)

Source: Dissertations Abstracts International, Volume: 82-11, Section: B.

Thesis (Ph.D.)--Karolinska Institutet (Sweden), 2021.

Includes bibliographical references

Transcriptome-wide studies of translation efficiencies are required to improve understanding of translational regulation and its role in homeostatic mechanisms. In Study 1, we developed an algorithm for analysis of translation efficiency, called anota2seq. We show that anota2seq outperforms current methodologies and, due to its unique analytical approach, it is the only method to statistically distinguish important modes for regulation of gene expression, i.e translation and translational buffering.Pancreatic cancer is a lethal malignancy with very limited treatment options. In Study 2, we evaluate the impact of using an eIF4A inhibitor, CR-31, on mRNA translation in pancreatic cancer. eIF4A is a component of the eIF4F translation initiation complex. We show that inhibiting eIF4A in murine and human pancreatic ductal adenocarcinoma (PDAC) models induces an energy crisis by impacting translation of mRNAs related to oxidative phosphorylation and glycolysis. This leads to the shift of metabolic dependency of PDACs towards reductive glutamine metabolism. Exploiting the dependence on reductive glutamine metabolism using a combined treatment of eIF4A and glutaminase inhibitors revealed an exciting therapeutic treatment strategy for PDAC that did not affect healthy cells.In Study 3, we investigated the effects of insulin on gene expression in malignant and non-malignant cells. This revealed that malignant cells modulate total mRNA levels differently in response to insulin compared to non-malignant cells, whereas in both translation was dependent on mammalian/mechanistic target of rapamycin (mTOR). However, mTOR inhibition during insulin stimulation in malignant cells lead to translational offsetting of alterations in total mRNA levels. Comparing the effects of mTOR inhibition in malignant cells to that of hypoxia in stem cells revealed that these vastly different cell types share the ability to translationally offset mRNAs.Collectively, these studies improved analysis of translational efficiencies and contributed to advanced understanding of the role of translational dysregulation in cancer.

Electronic reproduction.
Ann Arbor, Mich. :
ProQuest,
2023

Mode of access: World Wide Web

ISBN: 9798728224433Subjects--Topical Terms:

751006
Oncology.
Subjects--Index Terms:

Insulin-like growth factorsIndex Terms--Genre/Form:

542853
Electronic books.

Developing Analytical Tools to Investigate the Role of Translation in Homeostasis and Disease.
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520 $a Transcriptome-wide studies of translation efficiencies are required to improve understanding of translational regulation and its role in homeostatic mechanisms. In Study 1, we developed an algorithm for analysis of translation efficiency, called anota2seq. We show that anota2seq outperforms current methodologies and, due to its unique analytical approach, it is the only method to statistically distinguish important modes for regulation of gene expression, i.e translation and translational buffering.Pancreatic cancer is a lethal malignancy with very limited treatment options. In Study 2, we evaluate the impact of using an eIF4A inhibitor, CR-31, on mRNA translation in pancreatic cancer. eIF4A is a component of the eIF4F translation initiation complex. We show that inhibiting eIF4A in murine and human pancreatic ductal adenocarcinoma (PDAC) models induces an energy crisis by impacting translation of mRNAs related to oxidative phosphorylation and glycolysis. This leads to the shift of metabolic dependency of PDACs towards reductive glutamine metabolism. Exploiting the dependence on reductive glutamine metabolism using a combined treatment of eIF4A and glutaminase inhibitors revealed an exciting therapeutic treatment strategy for PDAC that did not affect healthy cells.In Study 3, we investigated the effects of insulin on gene expression in malignant and non-malignant cells. This revealed that malignant cells modulate total mRNA levels differently in response to insulin compared to non-malignant cells, whereas in both translation was dependent on mammalian/mechanistic target of rapamycin (mTOR). However, mTOR inhibition during insulin stimulation in malignant cells lead to translational offsetting of alterations in total mRNA levels. Comparing the effects of mTOR inhibition in malignant cells to that of hypoxia in stem cells revealed that these vastly different cell types share the ability to translationally offset mRNAs.Collectively, these studies improved analysis of translational efficiencies and contributed to advanced understanding of the role of translational dysregulation in cancer.
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