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From protein structure to function w...

J. Rigden, Daniel.

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From protein structure to function with bioinformatics

Record Type:	Electronic resources : Monograph/item
Title/Author:	From protein structure to function with bioinformatics/ edited by Daniel J. Rigden.
other author:	J. Rigden, Daniel.
Published:	Dordrecht :Springer Netherlands : : 2017.,
Description:	xv, 503 p. :ill., digital ;24 cm.
[NT 15003449]:	Preface -- Ab Initio Protein Structure Prediction -- Protein structures, interactions and function from evolutionary couplings -- Fold Recognition -- Comparative protein structure modelling -- Advances in computational methods for transmembrane protein structure prediction -- Bioinformatics approaches to the structure and function of intrinsically disordered proteins -- Prediction of Protein Aggregation and Amyloid Formation -- Prediction of biomolecular complexes -- Function Diversity within Folds and Superfamilies -- Function prediction using patches, pockets and other surface properties -- 3D Motifs -- Protein Dynamics: From Structure to Function -- Integrated servers for structure-informed function prediction -- Case Studies: Function Predictions Of Structural Genomics Results -- Prediction of protein function from theoretical models -- Index.
Contained By:	Springer eBooks
Subject:	Proteins - Structure-activity relationships -
Online resource:	http://dx.doi.org/10.1007/978-94-024-1069-3
ISBN:	9789402410693

From protein structure to function with bioinformatics
From protein structure to function with bioinformatics[electronic resource] /edited by Daniel J. Rigden. - 2nd ed. - Dordrecht :Springer Netherlands :2017. - xv, 503 p. :ill., digital ;24 cm.

Preface -- Ab Initio Protein Structure Prediction -- Protein structures, interactions and function from evolutionary couplings -- Fold Recognition -- Comparative protein structure modelling -- Advances in computational methods for transmembrane protein structure prediction -- Bioinformatics approaches to the structure and function of intrinsically disordered proteins -- Prediction of Protein Aggregation and Amyloid Formation -- Prediction of biomolecular complexes -- Function Diversity within Folds and Superfamilies -- Function prediction using patches, pockets and other surface properties -- 3D Motifs -- Protein Dynamics: From Structure to Function -- Integrated servers for structure-informed function prediction -- Case Studies: Function Predictions Of Structural Genomics Results -- Prediction of protein function from theoretical models -- Index.

This book is about protein structural bioinformatics and how it can help understand and predict protein function. It covers structure-based methods that can assign and explain protein function based on overall folds, characteristics of protein surfaces, occurrence of small 3D motifs, protein-protein interactions and on dynamic properties. Such methods help extract maximum value from new experimental structures, but can often be applied to protein models. The book also, therefore, provides comprehensive coverage of methods for predicting or inferring protein structure, covering all structural classes from globular proteins and their membrane-resident counterparts to amyloid structures and intrinsically disordered proteins. The book is split into two broad sections, the first covering methods to generate or infer protein structure, the second dealing with structure-based function annotation. Each chapter is written by world experts in the field. The first section covers methods ranging from traditional homology modelling and fold recognition to fragment-based ab initio methods, and includes a chapter, new for the second edition, on structure prediction using evolutionary covariance. Membrane proteins and intrinsically disordered proteins are each assigned chapters, while two new chapters deal with amyloid structures and means to predict modes of protein-protein interaction. The second section includes chapters covering functional diversity within protein folds and means to assign function based on surface properties and recurring motifs. Further chapters cover the key roles of protein dynamics in protein function and use of automated servers for function inference. The book concludes with two chapters covering case studies of structure prediction, based respectively on crystal structures and protein models, providing numerous examples of real-world usage of the methods mentioned previously. This book is targeted at postgraduate students and academic researchers. It is most obviously of interest to protein bioinformaticians and structural biologists, but should also serve as a guide to biologists more broadly by highlighting the insights that structural bioinformatics can provide into proteins of their interest.

ISBN: 9789402410693

Standard No.: 10.1007/978-94-024-1069-3doiSubjects--Topical Terms:

3235886
Proteins
--Structure-activity relationships

LC Class. No.: QP551

Dewey Class. No.: 572.633

From protein structure to function with bioinformatics
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245 0 0 $a From protein structure to function with bioinformatics $h [electronic resource] / $c edited by Daniel J. Rigden.
250 $a 2nd ed.
260 $a Dordrecht : $b Springer Netherlands : $b Imprint: Springer, $c 2017.
300 $a xv, 503 p. : $b ill., digital ; $c 24 cm.
505 0 $a Preface -- Ab Initio Protein Structure Prediction -- Protein structures, interactions and function from evolutionary couplings -- Fold Recognition -- Comparative protein structure modelling -- Advances in computational methods for transmembrane protein structure prediction -- Bioinformatics approaches to the structure and function of intrinsically disordered proteins -- Prediction of Protein Aggregation and Amyloid Formation -- Prediction of biomolecular complexes -- Function Diversity within Folds and Superfamilies -- Function prediction using patches, pockets and other surface properties -- 3D Motifs -- Protein Dynamics: From Structure to Function -- Integrated servers for structure-informed function prediction -- Case Studies: Function Predictions Of Structural Genomics Results -- Prediction of protein function from theoretical models -- Index.
520 $a This book is about protein structural bioinformatics and how it can help understand and predict protein function. It covers structure-based methods that can assign and explain protein function based on overall folds, characteristics of protein surfaces, occurrence of small 3D motifs, protein-protein interactions and on dynamic properties. Such methods help extract maximum value from new experimental structures, but can often be applied to protein models. The book also, therefore, provides comprehensive coverage of methods for predicting or inferring protein structure, covering all structural classes from globular proteins and their membrane-resident counterparts to amyloid structures and intrinsically disordered proteins. The book is split into two broad sections, the first covering methods to generate or infer protein structure, the second dealing with structure-based function annotation. Each chapter is written by world experts in the field. The first section covers methods ranging from traditional homology modelling and fold recognition to fragment-based ab initio methods, and includes a chapter, new for the second edition, on structure prediction using evolutionary covariance. Membrane proteins and intrinsically disordered proteins are each assigned chapters, while two new chapters deal with amyloid structures and means to predict modes of protein-protein interaction. The second section includes chapters covering functional diversity within protein folds and means to assign function based on surface properties and recurring motifs. Further chapters cover the key roles of protein dynamics in protein function and use of automated servers for function inference. The book concludes with two chapters covering case studies of structure prediction, based respectively on crystal structures and protein models, providing numerous examples of real-world usage of the methods mentioned previously. This book is targeted at postgraduate students and academic researchers. It is most obviously of interest to protein bioinformaticians and structural biologists, but should also serve as a guide to biologists more broadly by highlighting the insights that structural bioinformatics can provide into proteins of their interest.
650 0 $a Proteins $x Structure-activity relationships $x Research $x Methodology. $3 3235886
650 0 $a Proteins $x Structure $x Research $x Methodology. $3 3235887
650 0 $a Proteins $x Structure. $3 572811
650 0 $a Proteins $x Structure $x Computer simulation. $3 595431
650 0 $a Bioinformatics. $3 553671
650 1 4 $a Life Sciences. $3 890838
650 2 4 $a Protein Science. $3 1067276
650 2 4 $a Biomedicine general. $3 890966
650 2 4 $a Computer Appl. in Life Sciences. $3 892390
650 2 4 $a Proteomics. $3 600542
700 1 $a J. Rigden, Daniel. $3 3235885
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950 $a Biomedical and Life Sciences (Springer-11642)